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yeah i check checked and re re-checked the afm wiring! i dont know where the injector resistor pack or knock sensor are located, or even what to look for ha! and yeah i am using my old bov it was fine on old engine, had only had it on for a couple of months, just a greddy style rs jobby. and yeah im getting a check engine light. it has a funky idle too and when the idle started playing up on my old 61t thats when the check engine light came alive. the dudes that put my engine mismatched heaps of shit off my old 61 like CAS, leads and even coilpack i think! TPS probably too! maybe why my idles all messed up. plugs are super fouled up from the other night runnin standard vr4 ecu with no chip, i could actually get it to boost fully and rev right out smoothly though felt like my old 61t was faster. anyway got a new chip tonight for my ecu with injector compensation for around 600cc flow, cleaned up my spark plugs and fired it up, now it runs like absolute shit, feels like its runnin on 3 cylinders (probably is!) im guessing my plugs are burnt out or something? hmmm...
Injector resistor pack is a small silver box, should be bolted to your firewall (passenger side) and I think has 5 wires coming out of it. Knock sensor is on the firewall side of your block, 2 wires coming out of it, one goes to the ECU (pin 9) and the other goes to ground I think.
Like Mr Eagle says, buy new plugs. Also get an LED light and pull ECU error codes from the diagnostic port (the plug with nothing plugged into it, hidden up by your accelerator pedal). Theres plenty of how-to's on here and google.
Don't worry. You will get this sorted! A few months ago my car seemed like problem after problem, was frustrating getting it out of the driveway and realising it doesn't have enough power to move itself, dying in the middle of the road etc, thought i'd never get it sorted. Now it runs sweet bar a few minor things like piping, radiator leak, running too rich, error code 13 etc.
Heres an inj resistor pack:
 
And heres a list of error codes:
1 ECU Dead
9 Normal
11 Oxygen sensor
12 Air Flow sensor
13 Intake Air temperature sensor
14 Throttle Position Sensor
15 Idle Speed control
21 Coolant Temp Sensor
22 Crank angle Sensor
23 TDC Sensor
24 Vehicle Speed Sensor
25 Barometric pressure sensor (MAS)
31 Knock Sensor
32 MAP sensor faulty
36 Ignition Timing adjustment failure
39 Front oxygen sensor
41 Fuel injector failure
42 Fuel pump or circuit
43 EGR
44 Ignition Coil
55 Idle Air control
59 Rear oxygen sensor
61 ECM and transmission interlock
62 Induction control valve
69 Right rear oxygen sensor
71 Traction control
72 Traction control